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FastQC

FastQC

A tool for raw high-throughput sequencing data. The FastQC provides summary graphs and tables.

Topic

Sequencing; Data quality management; Sequence analysis

Details

  • Operation: Sequencing quality control
  • Input: BAM, SAM, FastQ
  • Output: HTML
  • Software interface: Graphical user interface
  • Language: Java
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Mature
  • Cost: Free
  • Version name: 0.11.8
  • Maturity: Mature
  • Credit: -
  • Contact: Simon Andrews (Head of Bioinformatics) simon.andrews _at_ babraham.ac.uk | Felix Krueger (Bioinformatician) felix.krueger _at_ babraham.ac.uk | Anne Segonds-Pichon (Bio-Statistician) anne.segonds-pichon _at_ babraham.ac.uk | Laura Biggins (Bioinformatician) laura.biggins _at_ babraham.ac.uk | Christel Krueger (Bioinformatician) christel.krueger _at_ babraham.ac.uk | Steven Wingett (Bioinformatician) steven.wingett _at_ babraham.ac.uk | o Montgomery (Biological Training Developer) jo.montgomery _at_ babraham.ac.uk
  • Collection: FQC Dashboard

Publications

Brown J, Pirrung M, McCue LA "FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool." Bioinformatics. 2017 Jun 9. pii: 3865781. https://doi.org/10.1093/bioinformatics/btx373
PMID: 28605449
PMCID: PMC5870778


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