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FastqPuri

FastqPuri

FastqPuri is a pre-processing tool for RNA-seq data. It removes adapter sequences and generates data quality reports and works for both single- and paired-end data.

Topic

Quality control; RNA-seq;

Details

  • Operation: Visualisation; RNA-Seq analysis
  • Input: FASTQ
  • Output: -
  • Software interface: Command-line user interface
  • Language: C, R
  • Operating system: Linux
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: -
  • Credit: German Federal Ministry of Education and Research (Bundesministerium für Bildung und Forschung.
  • Contact: Paula Pérez-Rubio paulaperezrubio _at_ gmail.com
  • Collection: -

Publications

Perez-Rubio P, Lottaz C, Engelmann JC "FastqPuri: high-performance preprocessing of RNA-seq data." BMC Bioinformatics. 2019 May 3;20(1):226. https://doi.org/10.1186/s12859-019-2799-0
PMID: 31053060
PMCID: PMC6500068


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