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FiRE - Finder of Rare Entities
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FiRE - Finder of Rare Entities

FiRE - Finder of Rare Entities is a tool to compute a rareness score to each individual expression profile in single-cell RNA-seq (scRNA-seq) data sets.



FiRE - Finder of Rare Entities

FiRE - Finder of Rare Entities is a tool to compute a rareness score to each individual expression profile in single-cell RNA-seq (scRNA-seq) data sets.

Topic

RNA-seq

Details

  • Operation: RNA-Seq analysis
  • Software interface: Command-line user interface
  • Language: Python, C++, R
  • Operating system: Linux
  • License: GNU General Public License v3
    • Cost: Free
  • Version name: -
  • Credit: The Department of Science and Technology (DST), Govt. of India.
  • Contact: jayadeva _at_ ee.iitd.ac.in | debarka _at_ iiitd.ac.in | jayadeva _at_ ee.iitd.ac.in
  • Collection: -

Publications

Jindal A, Gupta P, Jayadeva, Sengupta D "Discovery of rare cells from voluminous single cell expression data" Nat Commun. 2018 Nov 9;9(1):4719. https://doi.org/10.1038/s41467-018-07234-6
PMID: 30413715
PMCID: PMC6226447


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