FusionSeq is a tool for the identification of fusion transcript in RNA-seq data sets using paired-end reads. The FusionSeq includes functions to filter out spurious fusions caused by misalignment artifacts or random pairing. It ranks the candidate fusions using varied statistical methods.
RNA-Seq; Gene structure
Sboner A, Habegger L, Pflueger D, Terry S, Chen DZ, Rozowsky JS, Tewari AK, Kitabayashi N, Moss BJ, Chee MS, Demichelis F, Rubin MA, Gerstein MB "FusionSeq: a modular framework for finding gene fusions by analyzing paired-end RNA-sequencing data." Genome Biol. 2010; 11(10):R104 https://doi.org/10.1186/gb-2010-11-10-r104
PMID: 20964841
PMCID: PMC3218660
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