GRIT (Generalized RNA Integration Tool) is a tool to assemble transcripts using RNA-seq data. The GRIT pipeline combines RNA-seq and gene-boundary data, CAGE, RAMPAGE, and poly(A)-seq data.
Sequence assembly; RNA-Seq; Gene transcripts
Boley N, Stoiber MH, Booth BW, Wan KH, Hoskins RA, Bickel PJ, Celniker SE, Brown JB "Genome-guided transcript assembly by integrative analysis of RNA sequence data." Nat. Biotechnol. 2014; 32(4):341-6 https://doi.org/10.1038/nbt.2850
PMID: 24633242
PMCID: PMC4037530
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