GSAASeqSP

GSAASeqSP is a tool for gene set association analysis of sequence read count data. The algorithm includes functions for gene-level and gene set-level statistics.

Topic

RNA-Seq; Gene expression; Molecular interactions, pathways and networks; Genetics

Details

Operation: Pathway or network analysis; Gene-set enrichment analysis
Software interface: Graphical user interface
Language: Java
Operating system: Microsoft Windows, Mac OS X, Linux
License: Not stated

Cost

Version name: 2.0

Maturity:

Credit: Key Discipline Fund of National 211 Project, The Open Fund of State Key Laboratory of Silkworm Genome Biology, the National Institutes of Health (NIH), University Cancer Research Fund at UNC-CH, U.S. National Science Foundation (NSF).
Contact: Qing Xiong qxiong1 _at_ mdanderson.org | Qing Xiong qxiong1 _at_ aol.com
Collection: -

Publications

Xiong Q, Mukherjee S, Furey TS "GSAASeqSP: a toolset for gene set association analysis of RNA-Seq data." Sci Rep. 2014 Sep 12;4:6347. https://doi.org/10.1038/srep06347
PMID: 25213199
PMCID: PMC4161965

Download and documentation

Source: http://gsaa.unc.edu/software.jsp
Documentation: http://gsaa.unc.edu/documentation.html
Home page: http://gsaa.unc.edu/

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GSAASeqSP

GSAASeqSP

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Details

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Download and documentation

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