For better experience, turn on JavaScript!


Genexpi

Genexpi

Genexpi is a tool for the identification of sigma factors using a combination of data from literature and time-course gene expression data. The CyGenexpi (see links) plugin integrates Genexpi with the Cytoscape tool. The Genexpi tool is available as an R package,

Topic

Genetics; Sequence sites, features and motifs; Gene expression; Molecular interactions, pathways and networks; RNA-seq; ChIP-seq

Details

  • Operation: Expression analysis
  • Software interface: Command-line user interface; Library
  • Language: R, MATLAB, Java
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: 1.4.0
  • Credit: C4Sys research infrastructure project.
  • Contact: martin.modrak _at_ biomed.cas.cz | martin.modrak _at_ biomed.cas.cz | vohr _at_ biomed.cas.cz
  • Collection: -

Publications

Modrak M, Vohradsky J "Genexpi: a toolset for identifying regulons and validating gene regulatory networks using time-course expression data." BMC Bioinformatics. 2018 Apr 13;19(1):137. https://doi.org/10.1186/s12859-018-2138-x
PMID: 29653518
PMCID: PMC5899412


Download and documentation








If you find errors, please report here.