Genexpi is a tool for the identification of sigma factors using a combination of data from literature and time-course gene expression data. The CyGenexpi (see links) plugin integrates Genexpi with the Cytoscape tool. The Genexpi tool is available as an R package,
Genetics; Sequence sites, features and motifs; Gene expression; Molecular interactions, pathways and networks; RNA-seq; ChIP-seq
Modrak M, Vohradsky J "Genexpi: a toolset for identifying regulons and validating gene regulatory networks using time-course expression data." BMC Bioinformatics. 2018 Apr 13;19(1):137. https://doi.org/10.1186/s12859-018-2138-x
PMID: 29653518
PMCID: PMC5899412
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