GiniClust3

GiniClust3 is a tool to identify and cluster rare cell types in single-cell RNA-seq (scRNA-seq) data. The GiniClust3 is an improved version of GiniClust2.

Topic

RNA-seq

Details

Operation: RNA-Seq analysis; Expression profile clustering
Software interface: Command-line user interface
Language: Python
Operating system: Linux; Mac OS X
License: The MIT licence

Cost

Version name: 3

Maturity:

Credit: Claudia Barr Award, the National Institutes of Health (NIH).
Contact: gcyuan _at_ jimmy.harvard.edu
Collection: -

Publications

Rui Dong, Guo-Cheng Yuan "GiniClust3: a fast and memory-efficient tool for rare cell type identification" bioRxiv https://doi.org/10.1101/788554

Download and documentation

Source: https://github.com/rdong08/GiniClust3
Documentation: https://giniclust3.readthedocs.io/en/lat
est/
Home page: https://github.com/rdong08/GiniClust3

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GiniClust3

GiniClust3

Topic

Details

Publications

Download and documentation

TOOLS

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