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HTQC
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HTQC

HTQC (High-Throughput Quality Control) is a tool for quality control of Illumina sequencing data. The package also contains functions for filtering and generation of graphical reports.



HTQC

HTQC (High-Throughput Quality Control) is a tool for quality control of Illumina sequencing data. The package also contains functions for filtering and generation of graphical reports.

Topic

Sequencing; Quality affairs; Sequence analysis

Details

  • Operation: Sequencing quality control
  • Input: FASTQ
  • Output: -
  • Software interface: Command-line user interface
  • Language: C++
  • Operating system: Linux
  • License: Not stated
    • Cost: Free
  • Version name: 1.92.3
    • Maturity: Stable
  • Credit: -
  • Contact: Xi Yang yangx _at_ im.ac.cn | Di Liu liud _at_ im.ac.cn | Fei Liu liuf _at_ im.ac.cn | Jun Wu wuj007 _at_ im.ac.cn | Jing Zou zouj _at_ im.ac.cn | Xue Xiao pennydgu _at_ 126.com | Fangqing Zhao zhfq _at_ mail.biols.ac.cn | Baoli Zhu zhubaoli _at_ im.ac.cn
  • Collection: -

Publications

Yang X, Liu D, Liu F, Wu J, Zou J, Xiao X, Zhao F, Zhu B "HTQC: a fast quality control toolkit for Illumina sequencing data." BMC Bioinformatics. 2013 Jan 31;14:33. https://doi.org/10.1186/1471-2105-14-33
PMID: 23363224
PMCID: PMC3571943


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