For better experience, turn on JavaScript!


ISOP

ISOP

ISOP (ISOform-level expression Patterns) is a tool to characterize isoform expressions patterns in single-cell RNA-seq (scRNA-seq) data. The ISOP uses mixture modeling for the characterization.

Topic

RNA-Seq; Gene expression

Details

  • Operation: Differential gene expression analysis
  • Software interface: Command-line user interface
  • Language: R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: 0.99.1
  • Credit: Swedish Cancer Society (Cancerfonden), Swedish e-Science Research Centre (SERC), e-Science for Cancer Prevention and Control (ecpc), the Swedish Research Council (VetenskapsrÃ¥det).
  • Contact: Trung Nghia Vu nghiavtr _at_ gmail.com | mattias.rantalainen _at_ ki.se
  • Collection: -

Publications

Vu TN, Wills QF, Kalari KR, Niu N, Wang L, Pawitan Y, Rantalainen M "Isoform-level gene expression patterns in single-cell RNA-sequencing data." Bioinformatics 34(14): 2392-2400. https://doi.org/10.1093/bioinformatics/bty100
PMID: 29490015
PMCID: PMC6041805


Download and documentation








If you find errors, please report here.