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K-Branches
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K-Branches

K-Branches is a tool to detect branching points in single-cell RNA-seq (scRNBA-seq) data. The K-Branches algorithm uses K-branches clustering technique



K-Branches

K-Branches is a tool to detect branching points in single-cell RNA-seq (scRNBA-seq) data. The K-Branches algorithm uses K-branches clustering technique

Topic

Cell biology; RNA-seq; Statistics and probability

Details

  • Operation: Functional clustering; RNA-Seq analysis
  • Software interface: Command-line user interface
  • Language: R, Python
  • Operating system: Linux; Mac OS X
  • License: GNU Lesser General Public License version 3
    • Cost: Free
  • Version name: 0.21
  • Credit: Graduate School of Quantitative Biosciences Munich (QBM), the Helmholtz Postdoc Programme, Initiative, and Networking Fund of the Helmholtz Association, the German Science Foundation, the Bavarian government (BioSysNet).
  • Contact: fabian.theis _at_ helmholtz-muenchen.de
  • Collection: -

Publications

Chlis NK, Wolf FA, Theis FJ "Model-based branching point detection in single-cell data by K-branches clustering." Bioinformatics. 2017 Oct 15;33(20):3211-3219. https://doi.org/10.1093/bioinformatics/btx325
PMID: 28582478
PMCID: PMC5860029


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