LINCS_RNAseq is a tool for the analysis of RNA-seq data. The LINCS_RNAseq algorithm uses the unique molecular identifier data from the LINCS Drug ToxicitySignature (DToxS) Generation Center at the Icahn School of Medicine at Mount Sinai in New York. The pipeline has three steps: split, align, and merge.
Transcriptomics; RNA-seq
Hung LH, Lloyd W, Agumbe Sridhar R, Athmalingam Ravishankar SD, Xiong Y, Sobie E, Yeung KY "Holistic optimization of an RNA-seq workflow for multi-threaded environments." Bioinformatics. 2019 Oct 15;35(20):4173-4175. https://doi.org/10.1093/bioinformatics/btz169
PMID: 30859176
PMCID: PMC6792127
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