MMSEQ is a tool to estimate isoform in RNA-seq data. The MMSEQ algorithm uses a new statistical method that deconvolves the mapping of reads to haplotype-specific isoforms and works with paired-end reads.
RNA-Seq; Gene expression
Turro E, Su SY, Gonçalves Â, Coin LJ, Richardson S, Lewin A "Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads." Genome Biol. 2011; 12(2):R13 https://doi.org/10.1186/gb-2011-12-2-r13
PMID: 21310039
PMCID: PMC3188795
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