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MUSIC (Tongji University)

MUSIC (Tongji University)

MUSIC is an R tool to analyze single-cell data from a combination of Perturb-Seq, CRISP-seq, CROP-seq, and single-cell RNA-seq. The MUSIC algorithm analysis step consists of preprocessing, model construction, and perturbation impact prioritizing.

Topic

Gene expression; Transcriptomics; RNA-seq

Details

  • Operation: RNA-Seq analysis
  • Software interface: Command-line user interface
  • Language: R
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: Apache License 2.0
  • Cost: Free
  • Version name: 1.0
  • Credit: The National Key Research and Development Program of China, National Natural Science Foundation of China, Shanghai Rising-Star Program, Shanghai Natural Science Foundation Program, Fundamental Research Funds for the Central Universities.
  • Contact: Ping Wang pwangecnu _at_ 163.com | Bin Duan bioinfo_db _at_ 163.com
  • Collection: -

Publications

Duan B, Zhou C, Zhu C, Yu Y, Li G, Zhang S, Zhang C, Ye X, Ma H, Qu S, Zhang Z, Wang P, Sun S, Liu Q "Model-based understanding of single-cell CRISPR screening." Nat Commun. 2019 May 20;10(1):2233. https://doi.org/10.1038/s41467-019-10216-x
PMID: 31110232
PMCID: PMC6527552


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