MapSplice is a tool to align RNA-seq read to a reference sequence. The MapSplice algorithm uses the Burrows-Wheeler Transform (BWT) technique and can discover both canonical and non-canonical splice sites.
RNA-Seq
Wang K, Singh D, Zeng Z, Coleman SJ, Huang Y, Savich GL, He X, Mieczkowski P, Grimm SA, Perou CM, MacLeod JN, Chiang DY, Prins JF, Liu J "MapSplice: accurate mapping of RNA-seq reads for splice junction discovery." Nucleic Acids Res. 2010 Oct;38(18):e178. 27. https://doi.org/10.1093/nar/gkq622
PMID: 20802226
PMCID: PMC2952873
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