Myrna

Myrna is a pipeline tool to compute differential gene expression (DGE) in RNA-seq data. Myrna uses Bowtie, R, and runs as a parallel pipeline on a cluster or on a single computer.

Topic

RNA-Seq

Details

Operation: RNA-Seq analysis
Software interface: Command-line user interface
Language: R;Perl
Operating system: Linux
License: Other

Cost

Version name: 1.2.3

Credit: Amazon Web Services, Johns Hopkins Bloomberg School of Public Health Faculty Innovation Award, NIH.
Contact: Ben Langmead blangmea _at_ jhsph.edu
Collection: -

Publications

Langmead B, Hansen KD, Leek JT "Cloud-scale RNA-sequencing differential expression analysis with Myrna." Genome Biol. 2010; 11(8):R83 https://doi.org/10.1186/gb-2010-11-8-r83
PMID: 20701754
PMCID: PMC2945785

Download and documentation

Source: https://github.com/BenLangmead/myrna
Documentation: http://bowtie-bio.sourceforge.net/myrna/
manual.shtml
Home page: http://bowtie-bio.sourceforge.net/myrna/
index.shtml
Links: /tools/rna-seq/descriptions/Rbowtie2.htm
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Myrna

Myrna

Topic

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Download and documentation

TOOLS

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