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NGSQC
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NGSQC

NGSQC (Next Generation Sequencing Quality Control) is a pipeline tool for quality control of SOLiD platform sequencing data.



NGSQC

NGSQC (Next Generation Sequencing Quality Control) is a pipeline tool for quality control of SOLiD platform sequencing data.

Topic

Sequence analysis

Details

  • Operation: Read pre-processing
  • Software interface: Command-line user interface
  • Language: Python
  • Operating system: Linux
  • License: GNU GPL
    • Cost: Free for academic use
  • Version name: -
    • Maturity: Legacy
  • Credit: University of Michigan Center for Computational Medicine and Biology Pilot Project, Pritzker Neuropsychiatric Disorders Research Fund, the National Center for Integrated Biomedical Informatics; The National Institutes of Health (NIH).
  • Contact: Fan Meng mengf _at_ umich.edu
  • Collection: -

Publications

Dai M, Thompson RC, Maher C, Contreras-Galindo R, Kaplan MH, Markovitz DM, Omenn G, Meng F "NGSQC: cross-platform quality analysis pipeline for deep sequencing data." BMC Genomics. 2010 Dec 2;11 Suppl 4:S7. https://doi.org/10.1186/1471-2164-11-S4-S7
PMID: 21143816
PMCID: PMC3005923


Download and documentation

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