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NGS QC Toolkit

NGS QC Toolkit

NGS QC Toolkit is for quality control and filtering of Roche 454 and Illumina sequencing data. The toolkit also contains functions for sequence format conversion, trimming, and generation of sequence quality statistics.

Topic

Sequencing; Quality affairs; Sequence analysis

Details

  • Operation: Sequencing quality control
  • Input: FASTQ, FASTA
  • Output: -
  • Software interface: Command-line user interface
  • Language: Perl
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: Other
  • Cost: Free
  • Version name: 2.3.3
  • Maturity: Mature
  • Credit: Department of Biotechnology, Government of India.
  • Contact: Mukesh Jain mjain _at_ nipgr.res.in
  • Collection: -

Publications

Patel RK, Jain M "NGS QC Toolkit: a toolkit for quality control of next generation sequencing data." PLoS One. 2012;7(2):e30619. https://doi.org/10.1371/journal.pone.0030619
PMID: 22312429
PMCID: PMC3270013


Download and documentation

Currently not available or not maintained.








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