PIQA

PIQA is a tool for computing statistics for Illumina G1 sequencing data, such as tile-by-tile and cycle-by-cycle, cluster density, quality, and nucleotide frequencies.

Topic

Sequencing; Quality affairs; Sequence analysis

Details

Operation: Sequencing quality control
Input: FASTQ, Bustard, scarf
Output: -
Software interface: Command-line user interface
Language: R
Operating system: Microsoft Windows, Mac OS X, Linux
License: Not stated

Cost

Version name: -

Maturity:

Credit: Department of Homeland Security Science and Technology Directorate, Texas Learning and Computation Center, the Keck Center Biomedical Discovery Training Program of the Gulf Coast Consortia, the National Institutes of Health (NIH), CONACYT, Mexico.
Contact: Y. Fofanov yfofanov _at_ bioinfo.uh.edu
Collection: -

Publications

Martinez-Alcantara A, Ballesteros E, Feng C, Rojas M, Koshinsky H, Fofanov VY, Havlak P, Fofanov Y "PIQA: pipeline for Illumina G1 genome analyzer data quality assessment." Bioinformatics. 2009 Sep 15;25(18):2438-9. Epub 2009 Jul 14. https://doi.org/10.1093/bioinformatics/btp429
PMID: 19602525
PMCID: PMC2735671

Download and documentation

Currently not available or not maintained.

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