PRINSEQ is a tool for quality control of metagenomic sequence data. The PRINSEQ includes functions for summary statistics, such as read length, GC content, sequence complexity, quality score distributions, count of duplicate reads, Ns, and poly-A tails, assembly quality measures, and tag sequences. The package also contains functions for trimming, filtering, and data reformatting.
Transcriptomics; Metagenomics; Genomics
Schmieder R, Edwards R "Quality control and preprocessing of metagenomic datasets." Bioinformatics. 2011 Mar 15;27(6):863-4. 2011 Jan 28. https://doi.org/10.1093/bioinformatics/btr026
PMID: 21278185
PMCID: PMC3051327
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