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Parseq
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Parseq

Parseq is a tool to estimate transcription levels of microbial genomes in RNA-seq data. The Parseq algorithm uses a particle Gibbs algorithm.



Parseq

Parseq is a tool to estimate transcription levels of microbial genomes in RNA-seq data. The Parseq algorithm uses a particle Gibbs algorithm.

Topic

RNA-Seq; Transcriptomics; Statistics and probability

Details

  • Operation: Transcriptional regulatory element prediction
  • Software interface: Command-line user interface
  • Language: C++
  • Operating system: Linux
  • License: Not stated
    • Cost: Free
  • Version name: rev02
  • Credit: -
  • Contact: Mirauta Bogdan bogdan.mirauta _at_ upmc.fr | Nicolas Pierre Pierre.Nicolas _at_ jouy.inra.fr | Richard ugues. hugues.richard _at_ upmc.fr
  • Collection: -

Publications

Mirauta B, Nicolas P, Richard H "Parseq: reconstruction of microbial transcription landscape from RNA-Seq read counts using state-space models." Bioinformatics 2014; 30(10):1409-16 https://doi.org/10.1093/bioinformatics/btu042
PMID: 24470570


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