PennDiff is a tool to quantify RNA-seq data. The PennDiff algorithm uses both transcript-based and union-exon methods.
Gene expression; RNA-seq; Sequencing
Hu Y, Lin J, Hu J, Hu G, Wang K, Zhang H, Reilly MP, Li M "PennDiff: detecting differential alternative splicing and transcription by RNA sequencing." Bioinformatics. 2018 Jul 15;34(14):2384-2391. https://doi.org/10.1093/bioinformatics/bty097
PMID: 29474557
PMCID: PMC6041879
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