PennSeq is a tool for isoform-specific gene expression quantification in RNA-seq data. The PennSeq algorithm uses a statistical method permitting each isoform to have a separate specific distribution and uses a non-parametric procedure.
RNA-seq; Gene expression; RNA-seq; RNA
Hu Y, Liu Y, Mao X, Jia C, Ferguson JF, Xue C, Reilly MP, Li H, Li M "PennSeq: accurate isoform-specific gene expression quantification in RNA-Seq by modeling non-uniform read distribution." Nucleic Acids Res. 2014 Feb;42(3):e20. 20. https://doi.org/10.1093/nar/gkt1304
PMID: 24362841
PMCID: PMC3919567
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