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QTrim

QTrim

QTrim is a tool for trimming sequence reads based on Phred quality values. The download link is not currently working but if you are interested in obtaining the tool, email the Authors and request if QTrim is still available.

Topic

Sequence analysis; Data quality management

Details

  • Operation: Sequence trimming
  • Software interface: Command-line user interface
  • Language: Python
  • Operating system: Mac OS X, Linux
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: -
  • Maturity: Stable
  • Credit: Atlantic Philanthropies, the South African Department of Science and Technology, Science Foundation Ireland, Beaufort Marine Biodiscovery.
  • Contact: Ram Krishna Shrestha ram _at_ sanbi.ac.za | Baruch Lubinsky baruch _at_ sanbi.ac.za | Vijay B Bansode bansode _at_ ibmc-cnrs.unistra.fr | Mónica BJ Moinz M.Moniz _at_ warwick.ac.uk | Grace P McCormack grace.mccormack _at_ nuigalway.ie | Simon A Travers simon _at_ sanbi.ac.za
  • Collection: -

Publications

Shrestha RK, Lubinsky B, Bansode VB, Moinz MB, McCormack GP, Travers SA "QTrim: a novel tool for the quality trimming of sequence reads generated using the Roche/454 sequencing platform." BMC Bioinformatics. 2014 Jan 30;15:33. https://doi.org/10.1186/1471-2105-15-33
PMID: 24479419
PMCID: PMC3912918


Download and documentation

Currently not available or not maintained.








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