For better experience, turn on JavaScript!


R-SAP

R-SAP

R-SAP is an RNA-seq analysis pipeline tool. R-SAP can quantitate and uses a hierarchical decision-making scheme to characterize various classes of transcripts. R-SAP reports expression levels as RPKM (reads per kilobase of exon model per million mapped reads).

Topic

Bioinformatics; Nucleic acids; RNA-Seq; RNA

Details

  • Operation: RNA-Seq analysis
  • Software interface: Command-line user interface
  • Language: Perl
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: Ovarian Cancer Institute; Ovarian Cycle, The Waterfall Foundation; Deborah Nash Harris Endowment Fund and Robinson Family Foundation
  • Contact: Vinay K. Mittal vinaykmittal _at_ gatech.edu | John McDonald john.mcdonald _at_ biology.gatech.edu
  • Collection: -

Publications

Mittal VK, McDonald JF "R-SAP: a multi-threading computational pipeline for the characterization of high-throughput RNA-sequencing data." Nucleic Acids Res. 2012; 40(9):e67 https://doi.org/10.1093/nar/gks047
PMID: 22287631
PMCID: PMC3351179


Download and documentation

Currently not available or not maintained.








If you find errors, please report here.