For better experience, turn on JavaScript!


RCA (GIS)

RCA (GIS)

RCA (clustering single-cell RNA-seq data using reference component analysis) is an R tool for clustering single-cell RNA-seq data.

Topic

RNA-seq; Gene expression; Transcriptomics

Details

  • Operation: RNA-Seq analysis
  • Software interface: Command-line user interface
  • Language: R
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: The MIT License
  • Cost: Free
  • Version name: 1.0
  • Credit: The Agency for Science, Technology and Research (A*STAR), Fluidigm Singapore, Becton Dickinson Holdings, Biomedical Research Council (BMRC).
  • Contact: Huipeng Li lihp _at_ gis.a-star.edu.sg | lihuipengsmacsb _at_ gmail.com
  • Collection: -

Publications

Li H, Courtois ET, Sengupta D, Tan Y, Chen KH, Goh JJL, Kong SL, Chua C, Hon LK, Tan WS, Wong M, Choi PJ, Wee LJK, Hillmer AM, Tan IB, Robson P, Prabhakar S "Reference component analysis of single-cell transcriptomes elucidates cellular heterogeneity in human colorectal tumors." Nat Genet. 2017 May;49(5):708-718. https://doi.org/10.1038/ng.3818
PMID: 28319088


Download and documentation








If you find errors, please report here.