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RNA-QC-chain
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RNA-QC-chain

RNA-QC-Chain is an RNA-seq quality control tool, based on QC-Chain. The package has functions for quality assessment, trimming, filtering of ribosomal contamination, and reporting.



RNA-QC-chain

RNA-QC-Chain is an RNA-seq quality control tool, based on QC-Chain. The package has functions for quality assessment, trimming, filtering of ribosomal contamination, and reporting.

Topic

Sequencing; Quality affairs; Sequence analysis

Details

  • Operation: Sequence trimming; Sequencing quality control
  • Software interface: Command-line user interface
  • Language: C++
  • Operating system: Mac OS X, Linux
  • License: GNU General Public License v3
    • Cost: Free
  • Version name: 1.0
  • Credit: National Natural Science Foundation of China, Central Public-interest Scientific Institution Basal Research Fund, National Natural Science Foundation of China, Shandong Provincial Natural Science Foundation, China.
  • Contact: Qian Zho zhouqian _at_ ysfri.ac.cn
  • Collection: -

Publications

Zhou Q, Su X, Jing G, Chen S, Ning K "RNA-QC-chain: comprehensive and fast quality control for RNA-Seq data." BMC Genomics. 2018 Feb 14;19(1):144. https://doi.org/10.1186/s12864-018-4503-6
PMID: 29444661
PMCID: PMC5813327


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