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RNA-eXpress

RNA-eXpress

RNA-eXpress is a tool to annotate new biological significant transcript features in RNA-seq datasets.

Topic

Sequencing; RNA-Seq; Mapping

Details

  • Operation: RNA-Seq analysis
  • Input: BAM
  • Output: GTF
  • Software interface: Graphical user interface
  • Language: Java
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Other
  • Cost: Free
  • Version name: 1.4
  • Maturity: Stable
  • Credit: The National Health and Medical Research Council, the ARC Centre of Excellence in Structural and Functional MIcrobial Genomics, the Victorian Governments Operational Infrastructure Support Program.
  • Contact: Paul J. Hertzog paul.hertzog _at_ monash.edu
  • Collection: -

Publications

Forster SC, Finkel AM, Gould JA, Hertzog PJ "RNA-eXpress annotates novel transcript features in RNA-seq data." Bioinformatics 2013; 29(6):810-2 https://doi.org/10.1093/bioinformatics/btt034
PMID: 23396121
PMCID: PMC3597146


Download and documentation

Currently not available or not maintained.








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