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RNASeqExpressionBrowser

RNASeqExpressionBrowser

RNASeqExpressionBrowser is a tool for visualization of RNA-seq data. The RNASeqExpressionBrowser package contains functions for browsing genes using identifiers, annotations, sequence similarity, and searching differentially and co-expressed genes.

Topic

Genomics; Data visualisation

Details

  • Operation: Genome visualisation
  • Input: Matrix annotation information
  • Output: -
  • Software interface: Web user interface
  • Language: Python
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: GNU Lesser General Public License
  • Cost: Free
  • Version name: -
  • Maturity: Stable
  • Credit: The FWF (SFB Fusarium), the Deutsche Forschungsgemeinschaft (DFG).
  • Contact: Klaus F. X. Mayer k.mayer _at_ helmholtz-muenchen.de
  • Collection: -

Publications

Nussbaumer T, Kugler KG, Bader KC, Sharma S, Seidel M, Mayer KF "RNASeqExpressionBrowser--a web interface to browse and visualize high-throughput expression data." Bioinformatics. 2014 Sep 1;30(17):2519-20. Epub 2014 May 14. https://doi.org/10.1093/bioinformatics/btu334
PMID: 24833805


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