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Rcorrector

Rcorrector

Rcorrector is a tool to correct Illumina platform sequencing errors in RNA-seq datasets. The Rcorrector algorithm is based on k-mers and De Bruhin graphs.

Topic

RNA; RNA-Seq; Sequencing

Details

  • Operation: Sequencing error detection
  • Software interface: Command-line user interface
  • Language: C++;Perl;C
  • Operating system: Linux; Mac OS X
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: -
  • Credit: This work was supported in part by NSF awards ABI-1159078 and ABI-1356078 to LF.
  • Contact: Song L lsong10 _at_ jhu.edu
  • Collection: -

Publications

Song L, Florea L "Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads." Gigascience 2015 https://doi.org/10.1186/s13742-015-0089-y
PMID: 26500767
PMCID: PMC4615873


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