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Rcount

Rcount

Rcount is a tool to quantify the number of reads mapped to a specific gene (feature counts) in RNA-seq datasets. The Rcount algorithm specifically addresses the issue arising from reads mapping to multiple locations.

Topic

RNA-Seq; RNA; Sequence sites, features and motifs

Details

  • Operation: RNA-seq read count analysis
  • Software interface: Graphical user interface
  • Language: C++, Qt
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: 2
  • Credit: The University of Zurich, the Swiss National Science Foundation.
  • Contact: Schmid, Marc W Marc.Schmid2 _at_ uzh.ch
  • Collection: -

Publications

Schmid MW, Grossniklaus U "Rcount: simple and flexible RNA-Seq read counting." Bioinformatics 2015; 31(3):436-7 https://doi.org/10.1093/bioinformatics/btu680
PMID: 25322836


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