Rnnotator

Rnnotator is a pipeline tool for the generation of full-length transcript models by computing de novo assemblies of RNA-seq data sets. The Rnnotator algorithm specifically addresses issues arising from poor read quality and, read length, and can make deep coverage assemblies. It can use paired-end, stranded reads, multiple insert sizes, and works on multiple CPUs. Obtaining Rnnotator requires a license unless you are collaborating with the developer. Contact Lawrence Berkeley National Laboratory David Gilbert at DEGilbert_at_lbl.gov for more information.