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SC2P

SC2P

SC2P is a tool for the differential analysis of single-cell RNA-seq (scRNA-seq) data. The SC2P algorithm can compute the probability of gene being expressed and the difference in expression levels.

Topic

RNA-seq

Details

  • Operation: RNA-Seq analysis
  • Software interface: Command-line user interface
  • Language: R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU General Public License v>=2
  • Cost: Free
  • Version name: 1.0.2
  • Credit: NIH/NIGMS, NSF, the Assistant Secretary of Defense for Health Affairs; the Peer Reviewed Medical Research Program.
  • Contact: Zhijin Wu zhijin_wu _at_ brown.edu | Hao Wu hao.wu _at_ emory.edu
  • Collection: -

Publications

Wu Z, Zhang Y, Stitzel ML, Wu H "Two-phase differential expression analysis for single cell RNA-seq." Bioinformatics. 2018 Oct 1;34(19):3340-3348. https://doi.org/10.1093/bioinformatics/bty329
PMID: 29688282
PMCID: PMC6157076


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