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SCENT

SCENT

SCENT is a tool for the analysis of single-cell TNA-seq (scRNA-seq) data. The SCENT algorithm uses a signaling-based entropy to estimate the potency. The SCENT package also includes a lineage-inference algorithm.

Topic

RNA-Seq; Gene expression

Details

  • Operation: RNA-seq analysis
  • Software interface: Command-line user interface
  • Language: R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: 1.0
  • Credit: National Science Foundation of China, Royal Society Newton Advanced Fellowship, Medical Research Council.
  • Contact: a.teschendorff _at_ ucl.ac.uk
  • Collection: -

Publications

Teschendorff Andrew E "Single-cell entropy for accurate estimation of differentiation potency from a cell’s transcriptome" Nat Commun. 2017 Jun 1;8:15599. https://doi.org/10.1038/ncomms15599
PMID: 28569836
PMCID: PMC5461595


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