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SCNS
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SCNS

SCNS (Single Cell Network Synthesis) is a tool to compute and analyze regulatory networks in single-cell RNA-seq (scRNA-seq) data.



SCNS

SCNS (Single Cell Network Synthesis) is a tool to compute and analyze regulatory networks in single-cell RNA-seq (scRNA-seq) data.

Topic

RNA-seq; Transcriptomics; Molecular interactions, pathways and networks; Gene expression

Details

  • Operation: Pathway or network prediction; Gene regulatory network analysis
  • Software interface: Graphical user interface
  • Language: Javascript, F#
  • License: The MIT licence
    • Cost: Free
  • Version name: -
  • Credit: the Wellcome Trust and MRC Cambridge Stem Cell Institute, Microsoft Research.
  • Contact: Steven Woodhouse t-stwood _at_ microsoft.com | Nir Piterman nir.piterman _at_ gmail.com | Christoph M. Wintersteiger cwinter _at_ microsoft.com | Berthold Göttgens bg200 _at_ cam.ac.uk | Jasmin Fisher jf416 _at_ cam.ac.uk
  • Collection: -

Publications

Woodhouse S, Piterman N, Wintersteiger CM, Göttgens B, Fisher J "SCNS: a graphical tool for reconstructing executable regulatory networks from single-cell genomic data." BMC Syst Biol. 2018 May 25;12(1):59. https://doi.org/10.1186/s12918-018-0581-y
PMID: 29801503
PMCID: PMC5970485


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