For better experience, turn on JavaScript!


SCQC

SCQC

SCQC is a tool for quality control of single-cell RNA-seq (scRNA-seq) datasets. The SCQC algorithm has functions for gene-wise screening and library-wise screening.

Topic

Transcriptomics; RNA-seq; Gene expression

Details

  • Operation: Quality control report
  • Software interface: Command-line user interface
  • Language: R
  • Operating system: Linux; Mac OS X
  • License: Not stated
  • Cost: Free
  • Version name: 0.1.0
  • Credit: Gulf of Mexico Research Initiative, AMA Foundation, the National Institutes of Health.
  • Contact: H.N.Nakhoul hnakhoul _at_ tulane.edu | Y.-Z.Liu yliu8 _at_ tulane.edu
  • Collection: -

Publications

Bai YL, Baddoo M, Flemington EK, Nakhoul HN, Liu YZ "Screen technical noise in single cell RNA sequencing data." Genomics. 2020 Jan;112(1):346-355. https://doi.org/10.1016/j.ygeno.2019.02.014
PMID: 30802598


Download and documentation








If you find errors, please report here.