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SCRL

SCRL

SCRL (Single Cell Representation Learning) is a tool for collecting representations of single-cell RNA-seq information, such as pathways, from multiple sources.

Topic

RNA-seq

Details

  • Operation: Query and retrieval
  • Software interface: Commandline-user interface
  • Language: C++
  • Operating system: Linux
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Maturity: Mature
  • Credit: National Nature Science Foundation of China, National Basic Research Program of China, singhua National Laboratory for Information Science and Technology Cross-discipline Foundation, the National Institutes of Health (NIH)
  • Contact: Xiangyu Li lixiangyu13 _at_ mails.tsinghua.edu.cn
  • Collection: -

Publications

Li X, Chen W, Chen Y, Zhang X, Gu J, Zhang MQ "Network embedding-based representation learning for single cell RNA-seq data." Nucleic Acids Res. 2017 Nov 2;45(19):e166. https://doi.org/10.1093/nar/gkx750
PMID: 28977434
PMCID: PMC5737094


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