SLICE is a tool to estimate cellular differentiation states in single-cell RNA-seq (scRNA-seq) data. The SLICE algorithm also predicts differentiation lineages by computing cell trajectory entropies.
Gene expression; RNA-seq
Guo M, Bao EL, Wagner M, Whitsett JA, Xu Y "SLICE: determining cell differentiation and lineage based on single cell entropy." Nucleic Acids Res. 2017 Apr 20;45(7):e54. https://doi.org/10.1093/nar/gkw1278
PMID: 27998929
PMCID: PMC5397210
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