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SSrGE

SSrGE

SSrGE is a tool for the identification of subpopulations in single-cell RNA-seq (sc-RNA-seq) data. The SSrGE algorithm uses nucleotide variations for the identification.

Topic

Gene expression; RNA-seq

Details

  • Operation: RNA-Seq analysis; Prediction and recognition;
  • Software interface: Command-line user interface
  • Language: Python
  • License: The MIT licence
  • Cost: Free
  • Version name: -
  • Credit: NIEHS, NIH/NIGMS, NICHD. Hawaii Community Foundation Medical Research.
  • Contact: Lana X. Garmire lgarmire _at_ med.umich.edu
  • Collection: -

Publications

Poirion O, Zhu X, Ching T, Garmire LX "Using single nucleotide variations in single-cell RNA-seq to identify subpopulations and genotype-phenotype linkage." Nat Commun. 2018 Nov 20;9(1):4892. https://doi.org/10.1038/s41467-018-07170-5
PMID: 30459309
PMCID: PMC6244222


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