A pipeline tool for prediction of neoepitopes derived from small to large-sized indels in RNA-seq data. The ScanNeo pipeline comprises three steps: Indel discovery, annotation and filtering, and neoantigen prediction.
RNA-seq; Sequence analysis
Wang TY, Wang L, Alam SK, Hoeppner LH, Yang R "ScanNeo: identifying indel-derived neoantigens using RNA-Seq data." Bioinformatics. 2019 Oct 15;35(20):4159-4161. https://doi.org/10.1093/bioinformatics/btz193
PMID: 30887025
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