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SeqGSA

SeqGSA

SeqGSA is an R tool for the analysis of gene sets in RNA-seq data. The SeqGSA algorithm accounts for the effects of variable gene lengths.

Topic

RNA-Seq; Gene expression; Molecular interactions, pathways and networks; Genetics

Details

  • Operation: Pathway or network analysis; Gene-set enrichment analysis
  • Software interface: Command-line user interface
  • Language: R
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: Roswell Park Cancer Institute, National Cancer Institute (NCI).
  • Contact: Xing Ren xingren _at_ buffalo.edu
  • Collection: -

Publications

Ren X, Hu Q, Liu S, Wang J, Miecznikowski JC "Gene set analysis controlling for length bias in RNA-seq experiments." BioData Min. 2017 Feb 6;10:5. https://doi.org/10.1186/s13040-017-0125-9
PMID: 28184252
PMCID: PMC5294840


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