Home » Tools » RNA-seq Tools and Software » RNA-seq core analysis » SeqGSA

SeqGSA

SeqGSA is an R tool for the analysis of gene sets in RNA-seq data. The SeqGSA algorithm accounts for the effects of variable gene lengths.

Topic

RNA-Seq; Gene expression; Molecular interactions, pathways and networks; Genetics

Details

Operation: Pathway or network analysis; Gene-set enrichment analysis
Software interface: Command-line user interface
Language: R
Operating system: Microsoft Windows, Mac OS X, Linux
License: Not stated

Cost

Version name: -

Credit: Roswell Park Cancer Institute, National Cancer Institute (NCI).
Contact: Xing Ren xingren _at_ buffalo.edu
Collection: -

Publications

Ren X, Hu Q, Liu S, Wang J, Miecznikowski JC "Gene set analysis controlling for length bias in RNA-seq experiments." BioData Min. 2017 Feb 6;10:5. https://doi.org/10.1186/s13040-017-0125-9
PMID: 28184252
PMCID: PMC5294840

Download and documentation

Source: https://github.com/xingrenub/SeqGSA
Home page: https://github.com/xingrenub/SeqGSA

If you find errors, please report here.

SECTIONS

Tutorials
In-house software
Blog
News
Find Jobs
History
Definition of Bioinformatics
ENCYCLOPEDIA
COVID-19
⚬ Timeline of outbreak
⚬ Blog
⚬ Scientific Facts
⚬ Daily statistics
⚬ News

TOOLS

Find thousands of Bioinformatics and Life Science software tools and databases in the newly launched

Database of Bioinformatics Software Tools and Resources.

Ads