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SinQC

SinQC

SinQC (Single-cell RNA-seq Quality Control) is a tool for the detection of technical artifacts in single-cell RNA-seq (scRNA-seq) data. The SinQC algorithm uses both gene expression patterns and data quality information for the detection.

Topic

RNA-seq

Details

  • Operation: Validation
  • Software interface: Command-line user interface
  • Language: R, Python
  • Operating system: Linux; Mac OS X
  • License: Not stated
  • Cost: Free
  • Version name: 1.5
  • Credit: Morgridge Institute for Research. National Institutes of Health NIH.
  • Contact: PJiang _at_ morgridge.org | RStewart _at_ morgridge.org
  • Collection: -

Publications

Jiang P, Thomson JA, Stewart R "Quality control of single-cell RNA-seq by SinQC." Bioinformatics. 2016 Aug 15;32(16):2514-6. https://doi.org/10.1093/bioinformatics/btw176
PMID: 27153613
PMCID: PMC4978927


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