Slingshot is a tool for the identification of developmental trajectories in single-cell RNA-seq (scRNA-seq) data. The Slingshot algorithm can use prior knowledge via supervised graph construction.
Slingshot is a tool for the identification of developmental trajectories in single-cell RNA-seq (scRNA-seq) data. The Slingshot algorithm can use prior knowledge via supervised graph construction.
Credit:
National Institute of Mental Health BRAIN Initiative, National Institute on Deafness and Other Communication Disorders, National Center for Research Resources, Siebel Foundation, National Institute on Aging, National Human Genome Research Institute, California Institute of Regenerative Medicine.
Street K, Risso D, Fletcher RB, Das D, Ngai J, Yosef N, Purdom E, Dudoit S "Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics." BMC Genomics. 2018 Jun 19;19(1):477. https://doi.org/10.1186/s12864-018-4772-0
PMID: 29914354
PMCID: PMC6007078