Snaptron is a tool to search compiled RNA-seq data. The Snaptron algorithm uses R-tree, B-tree, and inverted indexing. It can also score splice junctions to estimate tissue specificity, the relative frequency of splicing patterns, and according to various other criteria.
RNA-seq; Data acquisition
Wilks C, Gaddipati P, Nellore A, Langmead B "Snaptron: querying splicing patterns across tens of thousands of RNA-seq samples." Bioinformatics. 2018 Jan 1;34(1):114-116. https://doi.org/10.1093/bioinformatics/btx547
PMID: 28968689
PMCID: PMC5870547
If you find errors, please report here.
SECTIONS
TutorialsFind thousands of Bioinformatics and Life Science software tools and databases in the newly launched
Ads