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SolexaQA

SolexaQA

SolexaQA is a tool for quality control of Illumina, Ion Torrent, and 454 sequencing data. The functions include visualization of data quality, trimming of low-quality data, and sorting reads based on sequencing quality. The tool runs both on single-end and paired-end data.

Topic

Sequence analysis; Data quality management; Data visualisation

Details

  • Operation: Sequencing quality control; Sequence visualisation; Sequence trimming
  • Input: FASTQ
  • Output: -
  • Software interface: Command-line user interface
  • Language: C++;R
  • Operating system: Linux; Mac OS X
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: 3.1.7.1
  • Maturity: Mature
  • Credit: Institute of Molecular BioSciences, Massey University, Palmerston North, New Zealand, the Marsden Fund of the Royal Society of New Zealand.
  • Contact: Murray Cox m.p.cox _at_ massey.ac.nz | MTruglio m.truglio _at_ massey.ac.nz
  • Collection: -

Publications

Cox MP, Peterson DA, Biggs PJ "SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data." BMC Bioinformatics. 2010 Sep 27;11:485. https://doi.org/10.1186/1471-2105-11-485
PMID: 20875133
PMCID: PMC2956736


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