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SplicingCompass

SplicingCompass

SplicingCompass is a tool to predict differentially splices genes between two separate conditions in RNA-seq datasets. The SplicingCompass uses a technique of computing geometric angles between the high dimensional vectors of exon read counts.

Topic

RNA; RNA-Seq; RNA splicing; Sequencing

Details

  • Operation: Splicing model analysis; RNA-Seq analysis
  • Software interface: Command-line user interface
  • Language: R
  • Operating system: Linux; Mac OS X
  • License: GNU General Public License v>=2
  • Cost: Free
  • Version name: 2.1_1.0
  • Maturity: Stable
  • Credit: Joint Germany-Israeli Research Program, Nationales Genom-Forschungs-Netz (NGFN+) for the neuroblastoma project, ENGINE.
  • Contact: Moritz Aschoff m.aschoff _at_ dkfz.de | König Rainer rainer.koenig _at_ uni-jena.de
  • Collection: -

Publications

Aschoff M, Hotz-Wagenblatt A, Glatting KH, Fischer M, Eils R, König R "SplicingCompass: differential splicing detection using RNA-seq data." Bioinformatics 2013; 29(9):1141-8 https://doi.org/10.1093/bioinformatics/btt101
PMID: 23449093


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