SplicingTypesAnno is a tool for the annotation and quantification of alternative splicing in RNA-seq datasets. The SplicingTypesAnno annotates major alternative splicing at exon/intron level, genome-scale annotation or gene-scale annotation, and outputs report in HTM plus additional BED files for IGV visualization.
RNA; RNA-Seq; RNA splicing
Sun X, Zuo F, Ru Y, Guo J, Yan X, Sablok G "SplicingTypesAnno: annotating and quantifying alternative splicing events for RNA-Seq data." Comput Methods Programs Biomed 2015; 119(1):53-62 https://doi.org/10.1016/j.cmpb.2015.02.004
PMID: 25720307
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