Subjunc is a tool to align RNA-seq reads and for the detection of exon-exon junctions and gene fusions. The Subjunc is part of the Subread package (see links). An R version is also available as Rsubread .
Mapping; RNA splicing; Sequencing; RNA-seq
Liao Y, Smyth GK, Shi W "The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote." Nucleic Acids Res. 2013 May 1;41(10):e108. 4. https://doi.org/10.1093/nar/gkt214
PMID: 23558742
PMCID: PMC3664803
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