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SymSim

SymSim

SymSim (Synthetic model of multiple variability factors for Simulation) is a tool to simulate single-cell RNA-seq (scRNA-seq) data.

Topic

Gene expression; RNA-seq; Sequencing; Transcriptomics

Details

  • Operation: Modeling and simulation
  • Software interface: Command-line user interface
  • Language: R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Artistic-2.0
  • Cost: Free
  • Version name: 0.0.0.9000
  • Credit: Ragon Institute of MGH, MIT, Harvard, NIH/NHLBI.
  • Contact: Nir Yosef niryosef _at_ berkeley.edu
  • Collection: -

Publications

Zhang X, Xu C, Yosef N "Simulating multiple faceted variability in single cell RNA sequencing." Nat Commun. 2019 Jun 13;10(1):2611. https://doi.org/10.1038/s41467-019-10500-w
PMID: 31197158
PMCID: PMC6565723


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