TASIC

TASIC is a tool to estimate temporal cell trajectories, branching, and cell assignments in single-cell RNA-seq (scRNA-seq) time series data.

Topic

RNA-seq; Gene expression; Cell biology; Developmental biology

Operation: Pathway or network prediction; Differential gene expression analysis; Gene expression profiling
Software interface: Graphical user interface
Language: MATLAB
Operating system: Linux; Mac OS X; Microsoft Windows
License: Not stated

Cost

Credit: National Institutes of Health (NIH), National Science Foundation (NSF).
Contact: Ziv Bar-Joseph zivbj _at_ cs.cmu.edu
Collection: -

Rashid S, Kotton DN, Bar-Joseph Z "TASIC: determining branching models from time series single cell data." Bioinformatics. 2017 Aug 15;33(16):2504-2512 https://doi.org/10.1093/bioinformatics/btx173
PMID: 28379537

Source: https://www.andrew.cmu.edu/user/sabrinar
/TASIC1/TASIC%20source%20code.zip
Home page: https://www.andrew.cmu.edu/user/sabrinar
/TASIC/TASIC.htm
Data: https://www.andrew.cmu.edu/user/sabrinar
/TASIC/TASIC_files/Page522.htm

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